G-SESAME

Gene Semantic Similarity Analysis and Measurement Tools
 

Gene Clustering

  • Upload a file containing gene names line by line. Sample file: Click Here
  • Assign semantic contribution factors (0.0 - 1.0) for "is-a" and "part-of" relationships respectively.
  • Set the similarity threshold decremental interval (< 0.5) for the hierarchical clustering.
  • Select proper filters (ontologies, species, data sources, evidence codes).
  • Press "Upload and Calculate" button and wait for the results.

File:

Semantic Contribution Factors (0.0-1.0):

       "is_a" relationship: (Recommending value 0.8)
       "part_of" relationship: (Recommending value 0.6)
Similarity threshold decremental interval (< 0.5):  

Ontologies

Molecular Function Biological Process Cellular Component

Species

Data sources

Evidence codes

Since clustering a set of genes may take very long time, you may check the email option and fill in your email address. The clustering results will be mailed to you when they are ready.

Email option

    Email address:
    Name of the result: (Optional )

 

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