Toggle navigation
G-SESAME
Home
Tools
Term Analysis
Semantic Similarity of two GO terms
Semantic Similarity of two GO terms (statistical methods)
Semantic Similarity of two GO term sets
Semantic Similarity of two GO term sets (Statistical methods)
Gene Analysis
Functional Similarity of two genes
Functional Similarity of two genes (Statistical methods)
Protein Analysis
Functional Similarity of two proteins
Pathway Analysis
Functional Similarity of two pathways
Pathway Ontology Term Analysis
Semantic Similarity of two pathway ontology terms
Knowledge Discovery
Gene Clustering Tool Based on G-SESAME Method
Gene Clustering Tool Based on Resnik, Jiang, and Lin's Method
Search Top N Similar Genes
Help
About us
Publications
Disclaimer
Tools
Term Analysis
Semantic Similarity of two GO terms
Semantic Similarity of two GO terms (statistical methods)
Semantic Similarity of two GO term sets
Semantic Similarity of two GO term sets (Statistical methods)
Gene Analysis
Functional Similarity of two genes
Functional Similarity of two genes (Statistical methods)
Protein Analysis
Functional Similarity of two proteins
Pathway Analysis
Functional Similarity of two pathways
Pathway Ontology Term Analysis
Semantic Similarity of two pathway ontology terms
Knowledge Discovery
Gene Clustering Tool Based on G-SESAME Method
Gene Clustering Tool Based on Resnik, Jiang, and Lin's Method
Search Top N Similar Genes
Gene Clustering Tool Based on G-SESAME Method
Upload a file containing gene names line by line.
Sample file:
Click Here
Assign semantic contribution factors (0.0 - 1.0) for "is-a" and "part-of" relationships respectively.
Set the similarity threshold decremental interval (< 0.5) for the hierarchical clustering.
Select proper filters (ontologies, species, data sources, evidence codes).
Press "Upload and Calculate" button and wait for the results.
File:
Semantic Contribution Factors (0.0-1.0):
"is_a" relationship:
(Recommending value 0.8)
"part_of" relationship:
(Recommending value 0.6)
Similarity threshold decremental interval (< 0.5)
Ontologies:
Molecular Function
Biological Process
Cellular Component
Species:
All
A. aeolicus
A. fulgidus
A. pernix
A. thaliana
A. tumefaciens str.
B. anthracis str. Am
B. aphidicola (Acyrt
B. burgdorferi
B. halodurans
B. melitensis
B. mori
B. subtilis
B. taurus
C. acetobutylicum
C. burnetii RSA 493
C. elegans
C. familiaris
C. jejuni
C. perfringens
C. pneumoniae
C. porcellus
C. vibrioides
D. melanogaster
D. radiodurans
D. rerio
D. virilis
Dictyostelium
E. caballus
E. coli
E. coli O157:H7
E. coli O6
G. gallus
G. sulfurreducens PC
H. herpesvirus 1
H. immunodeficiency
H. immunodeficiency
H. influenzae
H. pylori
H. pylori J99
H. sapiens
H. sp. NRC-1
L. innocua
L. lactis subsp. lac
L. major
L. monocytogenes
M. aeruginosa
M. bovis
M. fascicularis
M. genitalium
M. jannaschii
M. leprae
M. loti
M. musculus
M. pneumoniae
M. thermautotrophicu
M. tuberculosis
M. virus
N. meningitidis sero
N. meningitidis sero
N. sp. PCC 7120
O. aries
O. cuniculus
O. longistaminata
O. officinalis
O. rufipogon
O. sativa
O. sativa (indica cu
O. sativa (japonica
P. abyssi
P. aerophilum
P. aeruginosa
P. falciparum
P. horikoshii
P. multocida
P. syringae pv. toma
P. troglodytes
R. conorii
R. norvegicus
R. prowazekii
R. solanacearum
S. aureus subsp. aur
S. avermitilis
S. cerevisiae
S. coelicolor
S. immunodeficiency
S. meliloti
S. oneidensis MR-1
S. pneumoniae
S. pombe
S. pyogenes
S. scrofa
S. solfataricus
S. sp. PCC 6803
S. tokodaii
S. typhi
S. typhimurium
T. acidophilum
T. brucei
T. brucei TREU927
T. maritima
T. volcanium
V. cholerae
V. cholerae O1 biova
X. fastidiosa
X. laevis
Y. pestis
Data sources:
All
CGD
dictyBase
FlyBase
GeneDB_Lmajor
GeneDB_Pfalciparum
GeneDB_Spombe
GeneDB_Tbrucei
Gramene
MGI
RGD
SGD
TAIR
TIGR_CMR
TIGR_Tba1
UniProt
Wormbase
ZFIN
Evidence codes:
All Curator Approved
IGI
IEP
NAS
IPI
ND
IC
ISS
NR
RCA
IDA
IMP
TAS